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Abstract

This project aimed to isolate and characterize volcanic soil Actinobacteria from Deception Island, Antarctic. A total of twenty−four Actinobacteria strains were isolated using four different isolation media (Starch casein agar, R2 agar, Actinomycete isolation agar, Streptomyces agar) and characterized basing on 16S rRNA gene sequences. Tests for secondary metabolites were performed using well diffusion method to detect antimicrobial activities against eight different pathogens, namely Staphyloccocus aureus ATCC 33591, Bacillus megaterium , Enterobacter cloacae , Klebsiella oxytoca , S. enterica serotype Enteritidis, S. enterica serotype Paratyphi ATCC 9150, S. enterica serotype Typhimurium ATCC 14028 and Vibrio cholerae . Antimicrobial properties were detected against Salmonella paratyphi A and Salmonella typhimurium at the concentration of 0.3092±0.08 g/ml. The bioactive strains were identified as Gordonia terrae , Leifsonia soli and Terrabacter lapilli. Results from this study showed that the soil of Deception Island is likely a good source of isolation for Actinobacteria. The volcanic soil Actinobacteria are potentially rich source for discovery of antimicrobial compounds.
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Authors and Affiliations

Yoke−Kqueen Cheah
Learn−Han Lee
Cheng−Yun Catherine Chieng
Vui−Ling Clemente Michael Wong
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Abstract

The human movement to and from Antarctica has increased significantly in recent decades, particularly to the South Shetland Islands, King George Island (KGI), and Deception Island (DCI). Such movements may result in unintentional soil transfer to other warmer regions, such as tropical countries. However, the ability of Antarctic bacteria to survive in tropical climates remained unknown. Hence, the objectives of this work were (i) to determine the bacterial diversity of the soils at the study sites on the two islands, and (ii) to determine if simulated tropical-like growth climate conditions would impact overall diversity and increase the abundance of potentially harmful bacteria in the Antarctic soils. KGI and DCI soils were incubated for 12 months under simulated tropical conditions. After 6 and 12-months, samples were collected and subjected to metagenomic DNA extraction, 16S rDNA amplification, sequencing, and alignment analysis. The 12-month denaturing gradient gel electrophoresis (DGGE) analysis revealed changes in fingerprinting patterns and bacterial diversity indices. Following that, bacterial diversity analyses for KGI and DCI soils were undertaken using V3-V4 16S rDNA amplicon sequencing. Major bacterial phyla in KGI and DCI soils comprised Actinobacteria, Proteobacteria, and Verrucomicrobia. Except for Proteobacteria in KGI soils and Acidobacteria and Chloroflexi in DCI soils, most phyla in both soils did not acclimate to simulated tropical conditions. Changes in diversity were also observed at the genus level, with Methylobacterium spp. predominating in both soils after incubation. After the 12-month incubation, the abundance of potentially pathogenic bacteria such as Mycobacterium, Massilia, and Williamsia spp. increased. Overall, there was a loss of bacterial diversity in both Antarctic soils after 12 months, indicating that most bacteria from both islands' sampling sites cannot survive well if the soils were accidentally transported into warmer climates.
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Authors and Affiliations

Chuen Yang Chua
1
Clemente Michael Vui Ling Wong
1 2
ORCID: ORCID
Marcelo González-Aravena
3
ORCID: ORCID
Paris Lavin
4
ORCID: ORCID
Yoke Kqueen Cheah
5
ORCID: ORCID

  1. Biotechnology Research Institute, Universiti Malaysia Sabah, Jalan UMS, 88400 Kota Kinabalu, Sabah, Malaysia
  2. National Antarctic Research Centre, University of Malaya, 50603 Kuala Lumpur, Malaysia
  3. Instituto Antártico Chileno, Plaza Muñoz Gamero 1055, Punta Arenas, Chile
  4. Departamento de Biotecnologia, Facultad de Ciencias del Mar y Recursos Biologicos, Universidad de Antofagasta, Antofagasta 1270300, Chile
  5. Department of Biomedical Science, Faculty of Medicine and Health Sciences, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, Malaysia

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